Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
INCDNDLIGLASKCQKYVVKQ-GS---S---A-KP-----------SPECCKVVKNVNVPCVCSHVTKQIEDLI------------SMKKVFDVAKSCGKKVTPGTKCGSYTVPN
1PSY Chain:A ((27-116))
----------LSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17111 for 394 contacts (-43.4/contact) +
2D Compatibility (PS) -5875 + (NN) -2956 + (LL) 416
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -27976.0 ( -71.01 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: