Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCNTDLTD--LVSKCQRFVIKT---GPKF----SP------SPSCCAVVKNVDVACVCDLITKEIEDMI--------DMD----KMVYVARSCGKKISAGTKCGNTQANAGGIVSGYIVPTA
1SM7 Chain:A ((4-102))
-KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIG-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41592 for 489 contacts (-85.1/contact) +
2D Compatibility (PS) -7024 + (NN) 3499 + (LL) 644
1D Compatibility (HY) -800 + (ID) 650
Total energy: -45923.0 ( -93.91 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: