Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGLSPSQCKQEQTL-GVNACRDILLGK--------A----P-----------SPACCGRVRVSHVECICPAITPKLASLI------------NVKQAIKLLQDCGRKVPRHFKCGSLNFP
1PSY Chain:A ((15-116))
----SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19911 for 477 contacts (-41.7/contact) +
2D Compatibility (PS) -6880 + (NN) -3223 + (LL) 520
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -32844.0 ( -68.86 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: