Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSICNVSISGLTSCSPAVT----PPN-PAP-------PTSACCSALSHADLRCLCSYKNSTL---------LPS--LGIDQKLPLKLPEKCRLPHRAPC
2LVF Chain:A ((16-105))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15499 for 384 contacts (-40.4/contact) +
2D Compatibility (PS) -6972 + (NN) -3070 + (LL) 684
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -29157.0 ( -75.93 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: