Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPQQSCTASLT--GLNVCAPFLVPG----S-P-----TA-----------STECCNAVQSINHDCMCNTMR----------------------IAAQIPAQCNLPPLSCSAN
1PSY Chain:A ((16-120))
---QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---RCMR-
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39046 for 418 contacts (-93.4/contact) +
2D Compatibility (PS) -6369 + (NN) -1949 + (LL) -84
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -53448.0 ( -127.87 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: