Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGNASPDTEAW--KLAPCEAAAQNEKA---------------------APSKSCCLQVKKIGQNPDCLCAVMLSNTA----------KSSGIKPEVAVTIPKRCNLADRPVGYKCGGLFPFITLPLVFAS
1PSY Chain:A ((16-116))
------QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8297 for 474 contacts (-17.5/contact) +
2D Compatibility (PS) -7171 + (NN) -4508 + (LL) 952
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -21374.0 ( -45.09 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: