Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAACASKLTPCFPFLNNATA------------QPTADCCNPIKDTVANDLECLCNLYNDP--NLLSSLN--ITVAAALRISRECGVTTDLSACNV
1S6D Chain:A ((19-103))
-----EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMS--QPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33662 for 461 contacts (-73.0/contact) +
2D Compatibility (PS) -6949 + (NN) 803 + (LL) 964
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -43894.0 ( -95.21 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: