Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCPNELN---RLNVCAPFVVP------GVPEA-------TPSSDCCAALQSVQHDCLCNTLR----------------------IASRLPSRCNIPA-LSCGVQINA
1SM7 Chain:A ((4-105))
-KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP-----
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54716 for 401 contacts (-136.4/contact) +
2D Compatibility (PS) -6317 + (NN) 438 + (LL) 700
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -65995.0 ( -164.58 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: