Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSTDLSPYKPCLPAVMGT---TP-----------PSPTKECCIAVKSADILCLCEAVGTTELP--------G----LNKEAALTLPQRCGAVAFSTRVCGSK
1SM7 Chain:A ((15-102))
--------LRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIG-------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32133 for 404 contacts (-79.5/contact) +
2D Compatibility (PS) -6380 + (NN) 311 + (LL) 420
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -40832.0 ( -101.07 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: