Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------ACSLQQVAGCLDAVTKGATPTGSCCTQLGQVDAPCFCNLLAN------------GKYSDAYVNNALHVPARCGSNSAAYAKFKGRNCAGYVVP
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22660 for 426 contacts (-53.2/contact) +
2D Compatibility (PS) -7129 + (NN) -274 + (LL) 212
1D Compatibility (HY) 1200 + (ID) 600
Total energy: -29251.0 ( -68.66 by residue)
QMean score : 0.131
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: