Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTSPTPPDPSAACCATLGKADLKCLCSYKKSPW------LSLYNID---------PKRAMELPAKCGLSPPADC
1HSS Chain:A ((36-105))
-------------------------AVLRDCCQQLAHISEWCRCGALYSMLDSMYKEH----GAFPRCRREVVKLTAASITAVCRLPIVV--
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13006 for 234 contacts (-55.6/contact) +
2D Compatibility (PS) -4652 + (NN) -1864 + (LL) 1016
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -20206.0 ( -86.35 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: