Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
WTVNIPTPQSSCPLANPLSLNVCVDLLGLVHVVLGN--PSTVECCDIINGLGIDATVCLCTAIHLK-VLGLNVDIPLALKLLVTCGRELPNGLTC
2RKN Chain:A ((3-77))
---------DLCG-MSQDELNECKPAVS-----KENPTSPSQPCCTALQHADFA---CLCGYKNSPWLGSFGVDPELASALPKQCGLANAP--TC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70702 for 486 contacts (-145.5/contact) +
2D Compatibility (PS) -7374 + (NN) -902 + (LL) 1780
1D Compatibility (HY) -800 + (ID) 950
Total energy: -78948.0 ( -162.44 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: