Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSGCTNVLISMAPCLSYVT----GSS--ST-------PSSSCCSQLASVVLSQPQCLCAALNGG-GA------SL-G--LNINETLALALPGACKVQTPPVSKCNGKFKNNFLPEI
2LVF Chain:A ((17-108))
---------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--P-MRCPMG---------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23203 for 391 contacts (-59.3/contact) +
2D Compatibility (PS) -7176 + (NN) -961 + (LL) 1476
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -35564.0 ( -90.96 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: