Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCTFESTLPDLADCRPYVSTGST----QTDP-----------TAACCSELRNV--GHSCLCDLLRD------TKV-PSDI--DI-NRAVALPGKCSLPGADSCS
1W2Q Chain:A ((23-117))
---------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRC-
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37041 for 385 contacts (-96.2/contact) +
2D Compatibility (PS) -7253 + (NN) -4141 + (LL) 712
1D Compatibility (HY) -6800 + (ID) 750
Total energy: -55273.0 ( -143.57 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: