Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQQSCSDWTQLLDCQNAAS----DPSAT---------PSGECCNRIRQYQNAPDCLCTMLLAARNA-AQSTG-L-----PFNLQAALSIPAKCHVQVPSGYSCAGIPIPSS
2LVF Chain:A ((17-107))
---------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-P--MRCPM------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24523 for 409 contacts (-60.0/contact) +
2D Compatibility (PS) -7597 + (NN) -3302 + (LL) 596
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -38776.0 ( -94.81 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: