Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCSNDFTALLPCQAATQ----DAQA---------TPTAACCSVVEKFKDDPACLCSTIAAA--K---SA-GIS-----INEANAESIPTRCKFQGYPSCAKKI
2LVF Chain:A ((17-101))
--------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17878 for 337 contacts (-53.1/contact) +
2D Compatibility (PS) -6317 + (NN) -417 + (LL) 524
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -27588.0 ( -81.86 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: