Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VECKNNIA---DLLPCQAAAQSETS---------------TPSTECCTAVGKFKDDPACLCSTIAAAQAA-----GFT---I--DAPVAATIPKRCKLDGYPTSCSKSK
1SM7 Chain:A ((5-100))
--CQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37024 for 458 contacts (-80.8/contact) +
2D Compatibility (PS) -7220 + (NN) -1884 + (LL) 388
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -50840.0 ( -111.00 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: