Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCQGSIQDLKICVPYVQKKGPKIPPSQACCDAIKGVDILCVCHHLPPDIGELI--------SIEKVV----FVLQVCREPLAPGTKCGT
1PNB Chain:B ((11-69))
-------------------------REQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT-----
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44138 for 269 contacts (-164.1/contact) +
2D Compatibility (PS) -4373 + (NN) 4297 + (LL) 1156
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -45908.0 ( -170.66 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: