Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGDVATQLAPCINYLRSAG--PLPPACCNGVKNLKNSAATTQDRRTACKCLINA-SKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQVN
2RKN Chain:A ((4-75))
-LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSF-GVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36937 for 459 contacts (-80.5/contact) +
2D Compatibility (PS) -7383 + (NN) -3135 + (LL) 872
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -49433.0 ( -107.70 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: