Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSAAECKEETRL--AIKACKPVVYG----MD-------------PSPACCERARVTHVECVCPLITPKLAALI--------DVNK----AVRVIEGCGRKVPRHYKCGSITTP
1SM7 Chain:A ((3-103))
----QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31903 for 489 contacts (-65.2/contact) +
2D Compatibility (PS) -6830 + (NN) 2160 + (LL) 300
1D Compatibility (HY) -800 + (ID) 650
Total energy: -37723.0 ( -77.14 by residue)
QMean score : 0.204
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: