Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDTDITLTACLSYVAYP----NPPP-----PQPCCDAVLDVTAQARTREDRQAVCSCLKGLMIGI---------------PG--LD----LTALAALPKVCGANIGYEISPGMDCSKIN
1B1U Chain:A ((15-109))
--------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70060 for 406 contacts (-172.6/contact) +
2D Compatibility (PS) -6543 + (NN) -1295 + (LL) 1396
1D Compatibility (HY) -800 + (ID) 700
Total energy: -78002.0 ( -192.12 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: