Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALSCGQIQLTVAPCIGYLRTPGP-SVPAPCCNGIRSVYYQAKTTADRQGVCRCLKST-TLSLPGLNLPALAGAPAKCGVNVPYKVAPSIDCNTVRH
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGS-FGVDPELASALPKQCGLANAP-------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37896 for 483 contacts (-78.5/contact) +
2D Compatibility (PS) -7530 + (NN) -3793 + (LL) 1804
1D Compatibility (HY) 0 + (ID) 850
Total energy: -48265.0 ( -99.93 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: