Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SQVNAPCTWTEISE--EYDYCGDSLTRG---VPWV----------SPLKVCCDTIKLNKMKCICQVVTKTFSQNF--------DFYK----LSKLSHACGDLLVPGSYCGGNYH
1SM7 Chain:A ((2-102))
----PQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIG---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33990 for 507 contacts (-67.0/contact) +
2D Compatibility (PS) -7313 + (NN) 2962 + (LL) -136
1D Compatibility (HY) 800 + (ID) 500
Total energy: -38177.0 ( -75.30 by residue)
QMean score : 0.134
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: