Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------KKDLPFCNVELLPCVLPFKVRGHGSKLPNGCCEKMKKSTS-CMCRFLMAKERDLNAAAHRIFWFCKISVPNCPKI------------------------------------------
2R2C Chain:A ((36-180))
KSYKTWDVPIAKINIFAVAEYTDTQKIKVTVKGKILEGNTLPK-----SMVQVYLLEDKNHVLRGAVNGIWGEEFVNLKDYLYTYAVEPLSGMSFVAENYSIVAFVYDVQTFEVYDVVHVKINPQS
General information:
TITO was launched using:
RESULT:
Template:
2R2C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18713 for 358 contacts (-52.3/contact) +
2D Compatibility (PS) -7049 + (NN) 4828 + (LL) 360
1D Compatibility (HY) -800 + (ID) 400
Total energy: -21774.0 ( -60.82 by residue)
QMean score : 0.050
(partial model without unconserved sides chains):
PDB file :
Tito_2R2C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R2C-query.scw
PDB file :
Tito_Scwrl_2R2C.pdb
: