Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------------------------SPIKVVGAKKELPFCNLDLLAC---VQPF---------LVNGHGGKLPKGCCEKMKKSTSCMCRFL-TAKEQNLNAAAHRIFWFCHISVPNCPKI
1JMX Chain:A ((364-494))
KVEEVKVVPAFSIARIGENGASVPKVQGRFEAEAWGKDANGQPLRIGYLPASWKVEPFNERAVEDEDVKFAGKMQADGVFVPGGAGPNPE---RKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP--
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17741 for 370 contacts (-47.9/contact) +
2D Compatibility (PS) -8193 + (NN) -2312 + (LL) 208
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -31138.0 ( -84.16 by residue)
QMean score : 0.106
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: