Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFPKKVLGEEWEEGRKFNKLYQKDKQRKLIKRQGILRESQNGIQVYKEDPEIVEIAKPIGKWTQMVMQDGGLMQRLAQLMKRESGRKGFWELFVEAQASTHGKHKGKGR
4LYL Chain:B ((3-84))
---------------NLSDIIEKETGKQLVIQESILMLPEEVEEVIGNKPE--------SDILVHTAYDES-TDENVMLLTSDAPEYKPWALVIQ---DSNGENKIKML
General information:
TITO was launched using:
RESULT:
Template:
4LYL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 15668 for 559 contacts (28.0/contact) +
2D Compatibility (PS) -8517 + (NN) -2075 + (LL) 2584
1D Compatibility (HY) -3600 + (ID) 700
Total energy: 3360.0 ( 6.01 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_4LYL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYL-query.scw
PDB file :
Tito_Scwrl_4LYL.pdb
: