Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARNYYEILEY---VAPEEINKAYKRLGLKCHPDKLLP--KKRKISRIVKKAINGAALSKLELEEMQSL
1HDJ Chain:A ((1-59))
-GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEI-AEAYD--VLSDPRKREIFDR
General information:
TITO was launched using:
RESULT:
Template:
1HDJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13198 for 329 contacts (-40.1/contact) +
2D Compatibility (PS) -5595 + (NN) -2548 + (LL) 372
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -23919.0 ( -72.70 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1HDJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HDJ-query.scw
PDB file :
Tito_Scwrl_1HDJ.pdb
: