Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNKIGFLAVFALVISSQIGSGIFMLPISLAPYSTYSLISWAISGFGAVSLALVFATLCAKFPETGGPHVYVKHAFGPTAAFFVGWTYWVISWVSTTALIVVGVGYLTPFLHEEIKNIHLFLELLLFTIITLINLRGVA--TAGRVEFLLTVIKIAVLLAIPVMALFFFNRNNFIISKEMSSLTISQILARSTLLTLWCFVGVELATAPAGSVNNPAKTIPRAVVLGTICVAI---IYFINNFAIMGLINGNDLANSRAPYVDAIKIMFSGNWHLIISIVAFVFCVGSLNAWVLSSGQVAFGLAKDRLMPQLFAKRNEHGSPFWGITT--SSSGTAILLILTSNNNFAQQITSIIDFSVVSFLFVYLACSLAFLKVVIKERNYHKLLTGSIATT------FCCWVILETSINTLLIASLFTT-SGIP---LYLFWYRRASAQ |
| 4QNU Chain:A ((1-323)) | ---MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQ----------QHGLFKQWSNAVEFLPEIKPYRLDLLHS--------------------------VTAESEEPLSAGQIKRIETLMRNLMPWRKGPFSLYGVNIDTEWRSDWKWDRVLPH-----------------------LSDLT------GRTILDVGCGSGYHMWRMIGAGAH--------------LAVGIDPTQLFLCQFEAVRKLLGNDQ-----------------RAHLLPLGIEQLPALKAFDT-VFSMG--------------VLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPGDRYAQMRN--VYFIPSALALKNWLKKCGFVDIRIADVSVTTTEEQRRTEWMVTESLADFLDPHDPGKTVEGYPAPKRAVLIARKP--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4QNU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -363530 for 2425 contacts (-149.9/contact) +
2D Compatibility (PS) -31519 + (NN) 58 + (LL) 10132
1D Compatibility (HY) -8000 + (ID) 2950
Total energy: -395809.0 ( -163.22 by residue)
QMean score : 0.209
|
|
|