Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRISNFGPLIAILSSSVLSFTAGQYFSYVIAAVSSSSAVTAAPLAIFAVSMVIALVSAAYLIKLAVSIAGNKKEAGPSREALDRSGQQCTVSYGLTQESVCKDGALKNELNKHISFSSSSPICGTKTFSLSAPLLLNNALPPLLSLPLSQDAGAAPPPPPPPLFSQISLTQPSSAGLFAGVKNTKLKKISGPVKTPEYDDSRNAMLKQIRQGTKLLTKEERDEKLKKQAAMKDDKKEQSSDNVGGYSSTALFEKLKYRRLAIEFSDSESDRSNYSDNGDWSDRSVDKQKELREKKLTKRRGKSTSSNSQPYDEKSSATPSSGYISDDDADQQEPETATSSSCWSNKKEPPPVPPKPNLKCVNLQKEPPPVPPKPNLKCVNLQKESRAFLIKQ |
| 1CII Chain:A ((560-622)) | -RTENWRPLFVKTETIIAGNAATALVALVFSILT------GSALGIIGYGL-LMAVTGALIDESLVEKANKFW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42610 for 328 contacts (-129.9/contact) +
2D Compatibility (PS) -6494 + (NN) -589 + (LL) 12700
1D Compatibility (HY) -4400 + (ID) 600
Total energy: -41993.0 ( -128.03 by residue)
QMean score : 0.125
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