Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWSRLVAMCCFCLLLTGVSSCSKRGVNAINKMNFVVKQMKEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDNRGSYEYNVALGARRADAAKNFMVSCTPYLENRIKTASKGETEPLVYVADDSKNSKYEKEHAKNRRVEFSFSGMKK
4G88 Chain:G ((13-123))
----------------------------------------ELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQP---IADN----KTKEGRAMNRRVFATITGSR-
General information:
TITO was launched using:
RESULT:
Template:
4G88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9361 for 825 contacts (-11.3/contact) +
2D Compatibility (PS) -12517 + (NN) -10728 + (LL) 4016
1D Compatibility (HY) -800 + (ID) 1900
Total energy: -31290.0 ( -37.93 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4G88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G88-query.scw
PDB file :
Tito_Scwrl_4G88.pdb
: