Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVRSEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
3LGJ Chain:A ((20-134))
--GSMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFE------------KTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKLQTRKW--------YTTEIVLPQYKGELHLLDA-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52058 for 641 contacts (-81.2/contact) +
2D Compatibility (PS) -10124 + (NN) -800 + (LL) 2424
1D Compatibility (HY) -11600 + (ID) 2550
Total energy: -74708.0 ( -116.55 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_3LGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LGJ-query.scw
PDB file :
Tito_Scwrl_3LGJ.pdb
: