Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MHELSHMVENELNLSLEQEFLYKVYQDIERNLKQANIFVQKIIGQVIFKEIQAYQAAKPRTSELFALF---------------------------------------
2VKJ Chain:A ((1-106))
GSHMNLAVKLTRMEKTLKAYELYIFSDYENFENYVKKEGL---KIEGMELLKEKKA-RSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKLAGD
General information:
TITO was launched using:
RESULT:
Template:
2VKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10054 for 333 contacts (-30.2/contact) +
2D Compatibility (PS) -6849 + (NN) -975 + (LL) 536
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -20042.0 ( -60.19 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_2VKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VKJ-query.scw
PDB file :
Tito_Scwrl_2VKJ.pdb
: