Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKD-----TKFIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
4H3Z Chain:B ((26-249))
-----IVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSF--VDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLL
General information:
TITO was launched using:
RESULT:
Template:
4H3Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170593 for 1506 contacts (-113.3/contact) +
2D Compatibility (PS) -23145 + (NN) -7282 + (LL) 572
1D Compatibility (HY) -16400 + (ID) 4100
Total energy: -220948.0 ( -146.71 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Z-query.scw
PDB file :
Tito_Scwrl_4H3Z.pdb
: