Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGEDCAVLIISEIDQSKESVLVQEYTFTLET---IARALINAKERSVDVEVILDKSQLH--SKYSVINKLFSNGIPVWIDDKPKIAHNKVIIVDNQ---KVITGSFNLTKTAKKGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
2C1L Chain:A ((23-146))
-----------------LENVWVSNHTPGEGTLYLISGFSNYNGGVRFYETFTEHINQGGRVIAILGGSTSQRLSSRQVVEELLNRGVEVHIINRKRILHAKLYGTSNNLGESLVVSSGNFTGPGMSQNIEASLLLDN-NTTQSMGFSWNDMISEMLNQNWH
General information:
TITO was launched using:
RESULT:
Template:
2C1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63642 for 846 contacts (-75.2/contact) +
2D Compatibility (PS) -12277 + (NN) -1397 + (LL) 600
1D Compatibility (HY) -5600 + (ID) 1100
Total energy: -83416.0 ( -98.60 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2C1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C1L-query.scw
PDB file :
Tito_Scwrl_2C1L.pdb
: