Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKYIVFVLSYILGSIPFSLVITKIKGINLREVGSGNIGATNVARTGSKCIAALALLLDSLKGFIAV-YIAKQFFDDGSFHMYASAILVVLGHMFP---------VWLKFSGGKGVATTLGILIALNISLVLAFVFVWLAVFFAFRYSSLASLTSTIAAVLSSFFFQRD--LFFTLLTVAILIFFKHYRNIVNLLQGRER-KFS
1RXQ Chain:A ((5-178))
-------NLSYPIGEYKPRESIS--------------------KEQKDKWIQVLEEVPAKLKQAVEVMTDSQL---DTPYRDGGWTVRQVVHHLADSHMNSYIRFKLSLTEETPAIRPYDEKAWSELKDSKTADPSGSLALLQELHGRWTALLRTLTDQQFKRGFYHPDTKEIITLENALGLYVWHSHHHIAHITELSRRMGWS
General information:
TITO was launched using:
RESULT:
Template:
1RXQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157169 for 1096 contacts (-143.4/contact) +
2D Compatibility (PS) -16693 + (NN) -2622 + (LL) 1928
1D Compatibility (HY) 2400 + (ID) 1350
Total energy: -173506.0 ( -158.31 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_1RXQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RXQ-query.scw
PDB file :
Tito_Scwrl_1RXQ.pdb
: