Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVALKFIAIGLSVLGILGAGLGVANIFSTMLSGLARNPESEGKMKIYVYVGAGMVEFTGLLAFVLAMLLMFVA
5BQJ Chain:D ((4-74))
--VLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF--
General information:
TITO was launched using:
RESULT:
Template:
5BQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37280 for 400 contacts (-93.2/contact) +
2D Compatibility (PS) -7272 + (NN) -2934 + (LL) 468
1D Compatibility (HY) -9200 + (ID) 1250
Total energy: -57468.0 ( -143.67 by residue)
QMean score : 0.130
(partial model without unconserved sides chains):
PDB file :
Tito_5BQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BQJ-query.scw
PDB file :
Tito_Scwrl_5BQJ.pdb
: