Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSVTFILPDGSKKSYEAAEGETLLNLAHRSDPDL-LEGACEGSLACSTCHVIIDQNFYDAVETHNPISDEENDMLDLAFSLTETSRLGCQIKITKDIDGLCVTIPKGTRNISLDKQGND
1AYF Chain:B ((5-105))
--TVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLE---AITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP--------------
General information:
TITO was launched using:
RESULT:
Template:
1AYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54925 for 719 contacts (-76.4/contact) +
2D Compatibility (PS) -10686 + (NN) -1359 + (LL) 180
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -80040.0 ( -111.32 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_1AYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AYF-query.scw
PDB file :
Tito_Scwrl_1AYF.pdb
: