Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNRSTDTKRKEMIELKGPEICTDRSRENLIVCLHGRGSSGNNFVHLAKVMSKSLPNSCFVAP--NAPSKREIGNGYQWFSLEDRSEEVLYNGVKNAASIVNHFIDTKLKEFSLKDTQLSLVGFSQGAMLAIHTALTRPQCCASVVAYSGKFLSPSRVAPKIKSRPNVCVIHGDADNVVPFSFFDLTVKALKENGVNVEGYPIRTLGHLINKEGIKLGVEFIKKNFKK
2R8B Chain:A ((59-248))
------------------------VAGAPLFVLLHGTGGDENQFFDFGARLLP---QATILSPVGDVSEHG----AARFFRRTGEG-VYDMVDLERATGKMADFIKANREH--YQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPKI-SPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIRSGEIDAVRGFLAAYG--
General information:
TITO was launched using:
RESULT:
Template:
2R8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125992 for 1547 contacts (-81.4/contact) +
2D Compatibility (PS) -20482 + (NN) -11928 + (LL) 2240
1D Compatibility (HY) -8800 + (ID) 1750
Total energy: -166712.0 ( -107.76 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_2R8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R8B-query.scw
PDB file :
Tito_Scwrl_2R8B.pdb
: