Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGALTGLWLSFTALSHLIIGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
1B8W Chain:A ((1-42))
-----------------------------------------FVQHRPRDCESI-NGVCRHKDTVNCREIFLADCYNDGQKCCRK---------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1B8W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13769 for 244 contacts (-56.4/contact) +
2D Compatibility (PS) -4082 + (NN) 2867 + (LL) 8772
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -7912.0 ( -32.43 by residue)
QMean score : 0.009
(partial model without unconserved sides chains):
PDB file :
Tito_1B8W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B8W-query.scw
PDB file :
Tito_Scwrl_1B8W.pdb
: