Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKEKLFYTIGEVAEELHLEQHVLRFWESQFRQIKPIK--R-KGRRLYDHKCIEVIKKIKYMLYDKGYTIKGVQKEFDNNIKSSCNFGNLLPQLIDLRDYLINKINSEKSNEQL
1R8E Chain:A ((3-76))
----ESYYSIGEVSKLANVSIKALRYYDKI-DLFKPAYVDPDTSYRYYTDSQLIHLDLIKS-LKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKK
General information:
TITO was launched using:
RESULT:
Template:
1R8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43522 for 438 contacts (-99.4/contact) +
2D Compatibility (PS) -7496 + (NN) -2034 + (LL) 636
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -56066.0 ( -128.00 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_1R8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8E-query.scw
PDB file :
Tito_Scwrl_1R8E.pdb
: