Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
4JCV Chain:B ((27-215))
---SLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGM--EVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVS----
General information:
TITO was launched using:
RESULT:
Template:
4JCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110523 for 1220 contacts (-90.6/contact) +
2D Compatibility (PS) -20452 + (NN) -9687 + (LL) 912
1D Compatibility (HY) -16400 + (ID) 3800
Total energy: -159950.0 ( -131.11 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_4JCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JCV-query.scw
PDB file :
Tito_Scwrl_4JCV.pdb
: