Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDDNVAIVFNLTGNNPYNSFDNSTKNSRALEGVKCYSASKTEELCKVIKKRVTKKDYRENQESGQDKTPRKCKKLFKKGASP-EVLTKLGELLIEQEKYYNNYIQHFLPALKREIIKSKELNLIEKIKIEQIIMKLITSDAVSKNSNESHSNAETNEQSANGADNTLSCTAEN-S-ESGNTCEE-TSLKCWRSLPNLRDNSQFNFGEKLLTKMDTLEPETNASELNNGSGGDSGV-SLPG----LSEDGLE-SPLGSERSNVSSILSSAEEDNNLQKEENENQMKLDQTAREELQVQENKNQVSKVS-PVQP-PKKKKNVEDITMQKLPMNEKKGENILPKEQLSNREFYGIFTTGCALLAIGCFVGAVVIKSRALFLGLSVIAVVFATAAVAVWYLTLPPSSKLMYTNSSPVINNERSLLHV-- |
| 3DSM Chain:A ((1-327)) | ---ASGLFITNEGNFQYSNA-----------TLSYYDPATCEVENEVFYRANGFK--------------------LGDVAQSMVIRDGIGWIVVNNS--------HVIFAIDIN--TFKEVGRITGFTSPRYIHFLSDEKAYVTQIW----DYRIFIINPKTYEITGYIECPDMDMESGST-EQMVQYGKYVYVNC------WSYQNRIL-KIDT-ETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFKFKLGDWPSE-VQLNGTRDTLYWINNDIWRMP--------VEADRVPVR--------PFLEFRDTKYYGLTVNP---------------NNGEVYVAD---AIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 113189 for 2528 contacts (44.8/contact) +
2D Compatibility (PS) -32655 + (NN) -3517 + (LL) 5760
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: 65227.0 ( 25.80 by residue)
QMean score : 0.054
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