Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYNEKILDHYENPRNVGSLDKNDPSVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGKTIEDVTKIKNTQIVEELSLPPVKVHCSVLAEDAIKAAIHDYQSKHSKNES
3LVL Chain:A ((3-127))
-AYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKRE----
General information:
TITO was launched using:
RESULT:
Template:
3LVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38512 for 1030 contacts (-37.4/contact) +
2D Compatibility (PS) -13642 + (NN) -7539 + (LL) 268
1D Compatibility (HY) -14400 + (ID) 4550
Total energy: -78375.0 ( -76.09 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3LVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LVL-query.scw
PDB file :
Tito_Scwrl_3LVL.pdb
: