Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSNYFALFKIEPAFNISLDELEKKYIELSKTDINER-------QSQNMENINKAYQVLKSPLKRAEHLLNLFGVRSQEDQHNFEILNESMEIREYLLDCNNLQLASGMIDEKIKDCIKNLTNNFAVKNFDEAAMQVLRLKYLYKSFEEIKNETNSNF
2DMX Chain:A ((8-75))
-MANYYEVLGVQAS--ASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASGPSSG----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2706 for 372 contacts (-7.3/contact) +
2D Compatibility (PS) -6521 + (NN) -3684 + (LL) 5848
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -10063.0 ( -27.05 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_2DMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DMX-query.scw
PDB file :
Tito_Scwrl_2DMX.pdb
: