Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK---DNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK
3BJ6 Chain:A ((34-140))
---LREGVTVGQRAILEGLSLTPGATAPQLGAAL----QMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLT--------PRGEAIITAIRAD-EMAKLALFS--EGFSSVELTAYHKVQLA-
General information:
TITO was launched using:
RESULT:
Template:
3BJ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50217 for 663 contacts (-75.7/contact) +
2D Compatibility (PS) -10742 + (NN) -1773 + (LL) 1280
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -65652.0 ( -99.02 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_3BJ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJ6-query.scw
PDB file :
Tito_Scwrl_3BJ6.pdb
: