Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELIGDK-STVQQAIHALQLIGFENVKSYRLPQTN-IV---------------TSSIHSSEMT----GEEHNVLDVRNDDEWRKGHLKQAIHIPHGKLLNEDIPFDKNDLIYVHCQSGVRSSIAVGILEYKGFTNIVNVRGGYQHLPAFLK
1YT8 Chain:A ((325-471))
LVLVDDDGVRANMSASWLAQMGWQ-V-AVLDGLSEADFSERGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAA--
General information:
TITO was launched using:
RESULT:
Template:
1YT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54398 for 868 contacts (-62.7/contact) +
2D Compatibility (PS) -13817 + (NN) -5009 + (LL) 224
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -80800.0 ( -93.09 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1YT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YT8-query.scw
PDB file :
Tito_Scwrl_1YT8.pdb
: