Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNKDIYSDDFQNALVD---IILNIDKINVKEVFDDSCRAVDQDNKKDTLNRSPKDFSINISDIVRYSILCMENLSSDKIEENINMIKNHSSELNDNDM-FIQEKNNFTTNFNKFCNA-LGINI---ANFKSGKSYVFKP-K------------------------SLFVLYDILSNNSVYLHFFKNGIN-DKDIDSSNRIKENLYYFINHE----ITDQRDY----EHAL--------TNYYLYFLVDSNI-EIGIKSIIIKIFTEKGITSKDKLQIL-EYYLDEI---------DDLNTEISTKIADAHVKNSTNFLENEKVSINSNLAKYITHRDT-RASAPKNM----LLSLILNSDLVSPKDLEE--KELKYPKKITKEHHDKL--------------------IKEI-NKALDYYNDNNTTPS-DYFYITSD |
| 4KQA Chain:A ((3-428)) | -PHQPIPPSLGEKDLSDPFNFLFSSNKITLRKLYDLT-KNVDFDQLRQNECKKNITLSKFWEP---------EDDNWERFYSNIG-----SCSVYSDDQMIDNLLHDLNTSPIKHVHIMDGTQVKFVFTFKNDKQAVFKPMRFGRDYESDPNHFYFSDFERHHAEIATFHLDRVLGFRRAIPTVGRV-LNMTTELFEKAEKKLKKTFFFSPAKNFCFVSRCDYYCDTTHAICGLPDMKEGSVQVFLPDESAVPRKHNRSPYRRTYSKK--NQVAEWQSSMNYCTDKVKTKRQYAHGRRLLDLVDIHILDYLIGNQDRH-HFESFNVFNDLPSYAIHLDHGRAFGRSDFDDDDIILPLRQCCILRPSTFQTLMNFYSTPKSLTKALHESLSKDPAHPILAYKHYPAMERRLAKIMSHILECFESRGVAEVLVAEYNNPD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 40687 for 2281 contacts (17.8/contact) +
2D Compatibility (PS) -34791 + (NN) -7154 + (LL) 1944
1D Compatibility (HY) -11600 + (ID) 3150
Total energy: -14064.0 ( -6.17 by residue)
QMean score : 0.176
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