Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQND----FVSTI---IN-K-HKGKKVILLTAHRR--ENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNP-KVRAIAEK-YLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLV-LRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK |
| 1VGV Chain:A ((1-376)) | -----------MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVT-GHRRESF-GRGFEEICHALADIATTHQDIQIV-YPVHLNPNVREPVNRILGH-VKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRD-TTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172226 for 3042 contacts (-56.6/contact) +
2D Compatibility (PS) -38985 + (NN) -13875 + (LL) 1544
1D Compatibility (HY) -30000 + (ID) 8800
Total energy: -262342.0 ( -86.24 by residue)
QMean score : 0.499
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