Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGF--ISAKGKE---TPRNLMAFKDGTINPRKSNQLKDYVFI----DD---GWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAKEAN---TSILRRAFNYVDGTDDRTGNFETGLLFIAFQ-KATKQFIDIQNNL-GSNDKLNEYITHRGSASFLVLPGVSKGGYLGETLFD |
| 4GS1 Chain:B ((97-394)) | ----------------------------------------------------------------------------------------SAGLLPASLMVTIGIGGSLLEAMDAADRRPDALADLPEFATDDLRPRWCGGDLMLQVGAEDPMVLAAAVDELVAATAPTTTVRWSLRGFRRTAAAAQDPDATPRNLMGQIDGTANPAQDHPLFTRTVTAPPADDPAHAWMDGGSYLVVRRIRMLLDEWRRLDVPDRERVIGRHLDTGAPLGGEKETDPVVLTARDADGRLVIPEDAHVRLANPENNLGARMVRRGYNYDEGWRD-DGVRDAGLLFMAWQGNPATGFVPVQRSLVEQGDALNRYTRHEGSALFAV-PAATADRYPGQDLVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GS1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68152 for 2017 contacts (-33.8/contact) +
2D Compatibility (PS) -29911 + (NN) -7574 + (LL) 4568
1D Compatibility (HY) -17200 + (ID) 5550
Total energy: -123819.0 ( -61.39 by residue)
QMean score : 0.347
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