Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4KD4 Chain:A ((7-141))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTLKVMYKGQPMTFRLLLVDTPETKHP---VEKYGPEASAFTKKMIENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
4KD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50684 for 1063 contacts (-47.7/contact) +
2D Compatibility (PS) -13929 + (NN) -2536 + (LL) 5924
1D Compatibility (HY) -15600 + (ID) 6300
Total energy: -83125.0 ( -78.20 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_4KD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KD4-query.scw
PDB file :
Tito_Scwrl_4KD4.pdb
: